PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G039799.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 127aa    MW: 14345.4 Da    PI: 9.7561
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G039799.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26046.69.5e-153712599
                DUF260 25 eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99
                          e+p+kf nvh +FGasnv+kl +++ +++r++      y+Ae r++dP y+ +g+i+ lq+q+ +l++el+++++
  HL.SW.v1.0.G039799.1  3 ERPQKFVNVHNIFGASNVSKLHNEVLPHQRPA------YKAETRMKDPAYNYLGTISVLQRQVIRLQKELDATNT 71
                          689***************************95......********************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.8E-12370IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MPERPQKFVN VHNIFGASNV SKLHNEVLPH QRPAYKAETR MKDPAYNYLG TISVLQRQVI  60
RLQKELDATN TDLMRHAHTI DHHYVAKSIH PRFGLAHIDH SSGTLRSILT YFDPSSGVDP  120
IVPVFP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897789.15e-36PREDICTED: LOB domain-containing protein 25-like
RefseqXP_015897788.15e-36PREDICTED: LOB domain-containing protein 25-like
RefseqXP_015879301.15e-36PREDICTED: LOB domain-containing protein 25
RefseqXP_015879300.15e-36PREDICTED: LOB domain-containing protein 25
RefseqXP_010029135.15e-36PREDICTED: LOB domain-containing protein 25-like
SwissprotQ8L8Q35e-32LBD25_ARATH; LOB domain-containing protein 25
TrEMBLA0A059AQE96e-36A0A059AQE9_EUCGR; Uncharacterized protein
STRINGPOPTR_0001s35280.15e-35(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109134112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.13e-33LOB domain-containing protein 25